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Lizard_Size_Data
Skink size data - Lampropholis delicata
Tree_Size_Data
Garcinia recondita - Barro Colorado Island data
Tree_Size_Ests
Garcinia recondita model estimates - Barro Colorado Island data
Trout_Size_Data
SUSTAIN Salmo trutta data
hmde-package hmde
The 'hmde' package.
hmde_assign_data()
Assign data to template for chosen model
hmde_canham_de()
Differential equation for Canham growth single and multi- individual models
hmde_const_de()
Differential equation for constant growth single and multi- individual models
hmde_extract_estimates()
Extract samples and return measurement, individual, and population-level estimates
hmde_linear_de()
Differential equation for linear growth single individual model
hmde_model()
Select data configuration template for hmde supported model
hmde_model_des()
Function to select DE given model name
hmde_model_name()
Returns names of available models.
hmde_model_pars()
Show parameter list for hmde supported model
hmde_plot_de_pieces()
Plot pieces of chosen differential equation model for each individual. Structured to take the individual data tibble that is built by the hmde_extract_estimates function using the ind_par_name_mean estimates. Function piece will go from the first fitted size to the last. Accepted ggplot arguments will change the axis labels, title, line colour, alpha
hmde_run()
Run chosen pre-built model in Stan
hmde_vb_de()
Differential equation for von Bertalanffy growth single and multi- individual models